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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6327383_6352490_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6327383 - 6352490
Intron Length:
25108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAAGG
5'SS Class:
major
3'SS Sequence:
TCCACGCCGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TCTTGCATATCC
Flanking Amino Acid:
IANIRRNAQLGELTPTAEFR
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
62.5
43.9
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
59.5
0.21
1
53.1
36.7
Minor 5ss
27
-2.6
2.7
23.3
36.8
Minor BPS
48.1
-0.1
2.3
66.95
44.6

Associated Gene:

Gene:
RPA1
Ensembl Gene ID:
ENSAPLG00000012442
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034903
6311610 - 6354046
42437