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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6390392_6391779_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6390392 - 6391779
Intron Length:
1388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
CATCTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATCATT
Flanking Amino Acid:
FLVHYGHSCLIPIDATQGLK
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.1
60.8
38.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.1
0.68
0.8
72.4
37.3
Minor 5ss
33.8
-1.8
3.5
48
42.4
Minor BPS
64.8
0.55
2
88.85
36.2

Associated Gene:

Gene:
DPH1
Ensembl Gene ID:
ENSAPLG00000017581
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028064
6389476 - 6395950
6475