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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6393787_6394452_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6393787 - 6394452
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
GTGTGCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATCAAC
U12 Branch Point Sequence:
AACCCGTCCAGT
Flanking Amino Acid:
MIANPGIPAYRYDPYSKVFS
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
48.7
-0
1.2
58.1
34.8
Major PPT
68.9
0.43
1
62
39.9
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
34.8
-1.1
2.5
48.95
44

Associated Gene:

Gene:
DPH1
Ensembl Gene ID:
ENSAPLG00000017581
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028064
6389476 - 6395950
6475