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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_641050_642502_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
641050 - 642502
Intron Length:
1453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
CTCCTTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GAATACTGAAAT
Flanking Amino Acid:
AVSVTGRLPQGIVRELKSRG
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
77.8
0.63
0.8
72.2
32.4
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
50.1
0.08
1.7
67.18
42

Associated Gene:

Gene:
SUPT4H1
Ensembl Gene ID:
ENSAPLG00000012497
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013013
640982 - 643387
2406