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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_642823_642912_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
642823 - 642912
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CTGTCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAC
U12 Branch Point Sequence:
ATTCCCTCACAC
Flanking Amino Acid:
VYDCTSSSFDGIIAMMSPED
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.1
43.4
Major BPS
55.5
0.14
1
64.3
32.4
Major PPT
74.8
0.56
0.8
68.7
31.8
Minor 5ss
26.2
-2.7
2.9
22.9
37.3
Minor BPS
48.8
-0.1
1.9
64.34
40.5

Associated Gene:

Gene:
SUPT4H1
Ensembl Gene ID:
ENSAPLG00000012497
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013013
640982 - 643387
2406