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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6446757_6448696_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6446757 - 6448696
Intron Length:
1940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCGTTTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTCAATGACT
Flanking Amino Acid:
QPAFECLTTLRKLPKNKSLE
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
71.6
38.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
71.8
0.49
1
67.1
38.1
Minor 5ss
39.9
-1.1
2.8
52.3
44.5
Minor BPS
58.4
0.35
1.9
81.76
39.5

Associated Gene:

Gene:
HIC1
Ensembl Gene ID:
ENSAPLG00000029890
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045707
6398951 - 6448955
50005