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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6517295_6517519_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6517295 - 6517519
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GGGAATCCCACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTGTGCTGACCG
Flanking Amino Acid:
PTEEELQEAEASQRADRVVK
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.2
39.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
56.1
0.14
1
46.5
41.2
Minor 5ss
30.2
-2.3
2.6
28.5
36
Minor BPS
44.6
-0.5
2.2
51.53
48.6

Associated Gene:

Gene:
TSR1
Ensembl Gene ID:
ENSAPLG00000013422
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013999
6513194 - 6520302
7109