Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6517680_6518001_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6517680 - 6518001

Intron Length:

322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCGTGGG

5'SS Class:

major

3'SS Sequence:

TTTTGCCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCCAG

U12 Branch Point Sequence:

CTCTTCCCAGCT

Flanking Amino Acid:

RKKTQDMDVQEDCVNGTEEM

Intron Amino Acid Position:

322

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

63.3

43.1

Major BPS

49.3

-0

1.7

66.4

42.2

Major PPT

85.2

0.79

0.7

82.1

29.9

Minor 5ss

25.6

-2.8

3.1

31.6

42.7

Minor BPS

44.7

-0.3

2.1

64.26

46.1

Associated Gene:

Gene:

TSR1

Ensembl Gene ID:

ENSAPLG00000013422

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013999

6513194 - 6520302

7109