Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6518430_6518935_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6518430 - 6518935

Intron Length:

506

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

CCCTGTGCCGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAAAAC

U12 Branch Point Sequence:

AAAAACCTAACG

Flanking Amino Acid:

CLFAQGLPSYALAVPGGTDL

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

71.3

40.1

Major BPS

52.9

0.07

1.1

59.6

32.7

Major PPT

62.6

0.28

0.9

56.8

33.5

Minor 5ss

31.8

-2.1

3.1

36.5

41.9

Minor BPS

46.4

-0.4

1.9

51.38

41.7

Associated Gene:

Gene:

TSR1

Ensembl Gene ID:

ENSAPLG00000013422

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013999

6513194 - 6520302

7109