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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6519071_6519149_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6519071 - 6519149
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GCCCCACTAACG
Flanking Amino Acid:
QRWRFVTAQTGDLHAVLDLA
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
73.6
0.53
1
68.8
41.9
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
44.8
-0.5
2
47.75
44.7

Associated Gene:

Gene:
TSR1
Ensembl Gene ID:
ENSAPLG00000013422
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013999
6513194 - 6520302
7109