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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6522269_6523824_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6522269 - 6523824
Intron Length:
1556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTTAT
U12 Branch Point Sequence:
CTGCCCTTATTT
Flanking Amino Acid:
VSLQASSGHMWGTFRFERPD
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
66.5
0.41
1.1
57.2
40.1
Major PPT
85.3
0.8
0.8
79.9
31.7
Minor 5ss
34
-1.8
2.9
40.9
39.4
Minor BPS
60.2
0.4
1.7
73.02
44.3

Associated Gene:

Gene:
POLDIP2
Ensembl Gene ID:
ENSAPLG00000023003
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035073
6522154 - 6524521
2368