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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6541426_6541987_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6541426 - 6541987
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATTAAC
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GAGGCTCTAACT
Flanking Amino Acid:
IILLIPAAIVGWIEIWDSNP
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
74.2
36.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
84.5
0.78
0.6
84.4
23.4
Minor 5ss
35.7
-1.6
2.7
37.6
40
Minor BPS
50.7
0.1
1.8
66.47
44

Associated Gene:

Gene:
SLC46A1
Ensembl Gene ID:
ENSAPLG00000022313
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033654
6538931 - 6545037
6107