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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6542145_6543072_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6542145 - 6543072
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCACCGTTAACC
Flanking Amino Acid:
LSKLVGETEQGALFASVACV
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
72.7
0.56
1
75
30.1
Major PPT
89
0.88
0.7
84.6
29.9
Minor 5ss
33.5
-1.9
3.2
40.4
45.5
Minor BPS
58
0.23
2.1
68.7
42.5

Associated Gene:

Gene:
SLC46A1
Ensembl Gene ID:
ENSAPLG00000022313
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033654
6538931 - 6545037
6107