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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6543157_6543567_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6543157 - 6543567
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGCCA
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAG
U12 Branch Point Sequence:
CTTTCCCTAATA
Flanking Amino Acid:
LATTTPLMFTGYGILFLSMA
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
61.2
39
Major BPS
64.3
0.36
1.6
74
41.2
Major PPT
90.1
0.9
0.7
84.7
29.5
Minor 5ss
25.7
-2.8
3
31.1
42.4
Minor BPS
70.7
0.65
1.7
79.96
36.4

Associated Gene:

Gene:
SLC46A1
Ensembl Gene ID:
ENSAPLG00000022313
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033654
6538931 - 6545037
6107