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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6544421_6544503_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6544421 - 6544503
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGCC
5'SS Class:
major
3'SS Sequence:
GTTTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
GGGCCCTCAGGG
Flanking Amino Acid:
DSGSPDPLRQEVEALVSRWN
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
63.2
36.7
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
79.3
0.66
1
72.9
42.2
Minor 5ss
24.9
-2.9
3.3
32.9
42.4
Minor BPS
40.2
-0.8
2
39
43.6

Associated Gene:

Gene:
SLC46A1
Ensembl Gene ID:
ENSAPLG00000022313
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033654
6538931 - 6545037
6107