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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6547295_6550446_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6547295 - 6550446
Intron Length:
3152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTCCTTCTATC
Flanking Amino Acid:
LPLPLAIDTKEARCGYVIIL
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.8
0.63
0.8
77.3
29.9
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
47.8
-0.1
1.8
59.89
39.7

Associated Gene:

Gene:
SLC13A2
Ensembl Gene ID:
ENSAPLG00000014379
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015016
6546565 - 6559855
13291