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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6550576_6550889_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6550576 - 6550889
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGAGAT
5'SS Class:
major
3'SS Sequence:
CATGTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
CCTTGCTCCATG
Flanking Amino Acid:
PLMNIMDSTAVCMEYLKDTN
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
69.2
35.6
Major BPS
78.3
0.7
1
80
32.1
Major PPT
75.5
0.57
1
68.9
41.6
Minor 5ss
34.3
-1.8
3.6
52.9
44.9
Minor BPS
41.6
-0.8
2.3
46.49
47

Associated Gene:

Gene:
SLC13A2
Ensembl Gene ID:
ENSAPLG00000014379
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015016
6546565 - 6559855
13291