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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6552376_6553330_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6552376 - 6553330
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATGGG
5'SS Class:
major
3'SS Sequence:
TTTTGGGACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
GCTCCTGTAACT
Flanking Amino Acid:
PNNFTETDQKGDSNVLTIEE
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
0.9
65.5
40.5
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
62.8
0.29
1
54.8
45
Minor 5ss
26
-2.8
3
31.5
42.8
Minor BPS
55.2
0.24
2.1
73.8
43.1

Associated Gene:

Gene:
SLC13A2
Ensembl Gene ID:
ENSAPLG00000014379
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015016
6546565 - 6559855
13291