About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6555007_6555358_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6555007 - 6555358
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCACCA
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTCACTGAAAT
Flanking Amino Acid:
ATVLFNKNDTSFVTDATVAI
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
57.9
41.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.6
0.8
0.7
81.6
29.6
Minor 5ss
43.9
-0.7
2.8
58
46.1
Minor BPS
53.1
0.17
1.8
73.24
42.6

Associated Gene:

Gene:
SLC13A2
Ensembl Gene ID:
ENSAPLG00000014379
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015016
6546565 - 6559855
13291