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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6556175_6556839_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6556175 - 6556839
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTACAA
U12 Branch Point Sequence:
TCCTCTCTTACA
Flanking Amino Acid:
GGFALAKGSEESGLSKWLGS
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
49.4
-0
1.1
58.6
36.6
Major PPT
85.1
0.79
0.7
79.4
26.3
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
49.5
-0
2
63.56
42.8

Associated Gene:

Gene:
SLC13A2
Ensembl Gene ID:
ENSAPLG00000014379
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015016
6546565 - 6559855
13291