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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6557002_6557992_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6557002 - 6557992
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATATCATAAACC
Flanking Amino Acid:
TLFLPILAAMAENICLNPLY
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
79.4
0.73
1
80.1
32
Major PPT
75.2
0.57
0.8
72
32.7
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
57.9
0.23
1.9
71.2
39.5

Associated Gene:

Gene:
SLC13A2
Ensembl Gene ID:
ENSAPLG00000014379
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015016
6546565 - 6559855
13291