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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_655906_656294_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
655906 - 656294
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
TCTCTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
ATATGCTGAATA
Flanking Amino Acid:
TCPLCMFNILARDSVDQAPV
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
61.2
40.4
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
85.3
0.79
0.7
83.9
24.1
Minor 5ss
34.1
-1.8
3.7
46.7
43.4
Minor BPS
55.4
0.17
1.9
67.7
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012554
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013063
647052 - 707599
60548