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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6560383_6561100_R

Intron Information:

Intron Rank:
137730
Intron Class:
major
Intron Phase:
Intron Coordinates:
6560383 - 6561100
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
TCTCCTTTCTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATGAT
U12 Branch Point Sequence:
GATGGGTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
64.5
0.36
1.1
55.4
40.3
Major PPT
62.8
0.29
1.7
76
32.5
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
46.2
-0.2
2.4
60.96
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021620
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039378
6560155 - 6562909
2755