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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_656398_656937_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
656398 - 656937
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTCAGC
Flanking Amino Acid:
ICLEEFSEGQELRIISCSHE
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
73.2
39.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.5
0.75
0.7
82.1
30
Minor 5ss
39.2
-1.2
3.1
52.5
44.7
Minor BPS
48.6
-0.1
2.3
67.16
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012554
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013063
647052 - 707599
60548