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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_657094_657697_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
657094 - 657697
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CTTTCCTGAAAG
Flanking Amino Acid:
RTKCQLNRTQDSLQQQTMQA
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
69.6
0.49
1
59.5
39
Major PPT
83.4
0.75
0.9
84.6
30.4
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
64.9
0.33
1.7
69.82
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012554
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013063
647052 - 707599
60548