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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_657800_658307_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
657800 - 658307
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGACAC
5'SS Class:
major
3'SS Sequence:
TTTTATCCATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTGTTTTATCC
Flanking Amino Acid:
KIEVKEPPAWPDYDVWILLT
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
62.1
38.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80
0.68
0.9
79.4
33.7
Minor 5ss
26.4
-2.7
2.9
25.5
36.6
Minor BPS
54.5
0.12
1.7
64.74
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012554
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013063
647052 - 707599
60548