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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_658440_659752_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
658440 - 659752
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGACC
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TGTTTCTTTACA
Flanking Amino Acid:
ITDDESAADQLRKPRGLSQP
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
64
40.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
89.5
0.89
0.7
84
31
Minor 5ss
31.8
-2.1
3.4
43.8
43.7
Minor BPS
71.3
0.66
1.6
79.84
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012554
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013063
647052 - 707599
60548