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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6595450_6597279_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6595450 - 6597279
Intron Length:
1830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTAAG
5'SS Class:
major
3'SS Sequence:
TAATTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TAATCCTAAATA
Flanking Amino Acid:
GDSISPVQQTDNPSYNCQAY
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
67.3
39.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83
0.74
0.9
77.5
36.2
Minor 5ss
32.5
-2
2.8
43.3
43.8
Minor BPS
67.1
0.53
1.6
73.48
38.3

Associated Gene:

Gene:
FOXN1
Ensembl Gene ID:
ENSAPLG00000014618
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015232
6595301 - 6615881
20581