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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6597784_6599646_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6597784 - 6599646
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGTATC
5'SS Class:
major
3'SS Sequence:
GAATATTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTTCTAACA
Flanking Amino Acid:
PGQDHSSQVMQDSDIKLRTS
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
77.9
36.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.4
0.5
1
62.2
47.7
Minor 5ss
35.9
-1.6
2.7
43.6
37.6
Minor BPS
70.7
0.64
1.6
83.44
30.4

Associated Gene:

Gene:
FOXN1
Ensembl Gene ID:
ENSAPLG00000014618
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015232
6595301 - 6615881
20581