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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6605_6690_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6605 - 6690
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAACAT
U12 Branch Point Sequence:
GGCCACCAAACA
Flanking Amino Acid:
EEAPACIPPCGYQPAARIFQ
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
50.9
0.02
1.1
59
36.1
Major PPT
75
0.56
0.8
65.9
35.2
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
41
-0.6
2
48.45
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024958
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020589
5055 - 8928
3874