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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6632299_6633903_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6632299 - 6633903
Intron Length:
1605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TCACTCTTATCT
Flanking Amino Acid:
AFLRLRQVGATVEFTVGDKP
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
87
30
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
38.8
-1.3
2.8
50.6
39.2
Minor BPS
60.2
0.4
1.6
73.82
42.9

Associated Gene:

Gene:
UNC119
Ensembl Gene ID:
ENSAPLG00000015950
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016639
6631286 - 6636164
4879