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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6634007_6636050_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6634007 - 6636050
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TGCGCTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
ACGACAGTGATG
Flanking Amino Acid:
LFEITKPAASEREHNDKKDI
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
77.8
0.62
0.9
68.7
42
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
38.5
-1
2.1
37.91
39.1

Associated Gene:

Gene:
UNC119
Ensembl Gene ID:
ENSAPLG00000015950
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016639
6631286 - 6636164
4879