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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6688662_6689138_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6688662 - 6689138
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCACCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TTGTTCTCCACC
Flanking Amino Acid:
TKKFVEEDEDDEEEEEENLD
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
78.2
37.9
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
70.8
0.47
0.8
63.3
32.8
Minor 5ss
35.2
-1.7
3.2
51.1
45.2
Minor BPS
53.9
0.1
2
69.88
41.9

Associated Gene:

Gene:
SUPT6H
Ensembl Gene ID:
ENSAPLG00000001319
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001927
6688553 - 6709315
20763