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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6689298_6689441_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6689298 - 6689441
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
GCTTTCTCGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTAAA
U12 Branch Point Sequence:
GAGACTGTAACT
Flanking Amino Acid:
DDVGHKKRKRTFDDRLEDDD
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
55.1
0.13
1.2
57.3
36.3
Major PPT
70
0.45
0.9
70
36.5
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
49.3
0.03
2.1
66.51
44

Associated Gene:

Gene:
SUPT6H
Ensembl Gene ID:
ENSAPLG00000001319
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001927
6688553 - 6709315
20763