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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6690939_6691314_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6690939 - 6691314
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTGCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAT
U12 Branch Point Sequence:
TGGGGCTGAAGT
Flanking Amino Acid:
WRKKLPGYTDAALQEAQEIF
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.3
81.8
38.5
Major BPS
70.5
0.51
1.3
74
41.2
Major PPT
86.4
0.82
0.8
77.7
36.7
Minor 5ss
42.6
-0.8
2.9
56
41.5
Minor BPS
44.1
-0.3
2.2
61.1
48.2

Associated Gene:

Gene:
SUPT6H
Ensembl Gene ID:
ENSAPLG00000001319
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001927
6688553 - 6709315
20763