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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6693565_6694104_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6693565 - 6694104
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTCAT
5'SS Class:
major
3'SS Sequence:
GTTTCTGACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CGTTTCTGACCT
Flanking Amino Acid:
LNFMRNQHFEVPFIAFYRKE
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
69
43.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
65.9
0.36
1
58.7
42.1
Minor 5ss
40.4
-1.1
3.2
58.7
45.8
Minor BPS
54.8
0.23
1.8
72.98
43.9

Associated Gene:

Gene:
SUPT6H
Ensembl Gene ID:
ENSAPLG00000001319
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001927
6688553 - 6709315
20763