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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6696128_6696218_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6696128 - 6696218
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CAGTGCTTACTG
Flanking Amino Acid:
PLELAKDYVCSQFPSPEAVL
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1.2
76.2
39.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
88.6
0.87
0.6
82
30
Minor 5ss
31.7
-2.1
3.1
40.6
45.6
Minor BPS
45.7
-0.4
2.1
47.56
46.2

Associated Gene:

Gene:
SUPT6H
Ensembl Gene ID:
ENSAPLG00000001319
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001927
6688553 - 6709315
20763