About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6696918_6697487_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6696918 - 6697487
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTATAT
U12 Branch Point Sequence:
CTGTCTATATCT
Flanking Amino Acid:
DISIDMKGVEGYGSDQTYFE
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.4
40.3
Major BPS
66.7
0.41
1.1
63.2
42.8
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
31
-2.2
2.9
34.5
41
Minor BPS
51.8
0.13
1.9
72.27
44.9

Associated Gene:

Gene:
SUPT6H
Ensembl Gene ID:
ENSAPLG00000001319
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001927
6688553 - 6709315
20763