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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6698160_6698237_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6698160 - 6698237
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
CTTTGTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TGTTTCTGAGTG
Flanking Amino Acid:
RVLGIAFSSARDHPVFCALV
Intron Amino Acid Position:
786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.1
40.1
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
86
0.81
0.8
80.7
31.4
Minor 5ss
28.4
-2.5
3.5
38.3
46.7
Minor BPS
51.6
-0
1.7
60.73
41.4

Associated Gene:

Gene:
SUPT6H
Ensembl Gene ID:
ENSAPLG00000001319
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001927
6688553 - 6709315
20763