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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6699070_6699259_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6699070 - 6699259
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAGCA
5'SS Class:
major
3'SS Sequence:
CATCTCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
CTCCCCTCAATA
Flanking Amino Acid:
PHVVTIAGENRDAQMLMEDV
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
68.7
36.4
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
70.2
0.45
0.8
62.2
34.3
Minor 5ss
26.1
-2.7
3
31.3
42.3
Minor BPS
58.5
0.26
1.6
64.86
41.9

Associated Gene:

Gene:
SUPT6H
Ensembl Gene ID:
ENSAPLG00000001319
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001927
6688553 - 6709315
20763