Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6699927_6700272_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6699927 - 6700272

Intron Length:

346

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGTT

5'SS Class:

strong_major

3'SS Sequence:

TCCCTTCTGTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACACAT

U12 Branch Point Sequence:

GCGAGGCTAATG

Flanking Amino Acid:

ILCLKLHPLQEHVVKEELLN

Intron Amino Acid Position:

943

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.1

0.99

0.8

30.3

Major BPS

57.6

0.19

64.6

32.2

Major PPT

0.59

0.9

76.1

32.4

Minor 5ss

35.2

-1.7

3.8

49.2

Minor BPS

33.8

-1.3

2.3

32.84

40.9

Associated Gene:

Gene:

SUPT6H

Ensembl Gene ID:

ENSAPLG00000001319

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001927

6688553 - 6709315

20763