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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6701094_6702201_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6701094 - 6702201
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTGTCCTTATCT
Flanking Amino Acid:
IKIDTASLGDSTDSYIEVLD
Intron Amino Acid Position:
1041

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.2
0.7
0.9
78.1
40.1
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
72.9
0.8
1.6
84.84
41.6

Associated Gene:

Gene:
SUPT6H
Ensembl Gene ID:
ENSAPLG00000001319
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001927
6688553 - 6709315
20763