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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6706051_6706327_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6706051 - 6706327
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCTAA
U12 Branch Point Sequence:
CTTTCTCTAATT
Flanking Amino Acid:
YQDCNGGDKKKLEELLIKTK
Intron Amino Acid Position:
1404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
52
0.05
1.3
52.7
42.7
Major PPT
74.2
0.54
0.9
75.5
33.2
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
68
0.64
1.7
84.17
37.2

Associated Gene:

Gene:
SUPT6H
Ensembl Gene ID:
ENSAPLG00000001319
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001927
6688553 - 6709315
20763