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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6706453_6706692_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6706453 - 6706692
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
TCTCCCACATTC
Flanking Amino Acid:
LLGYQPRGKPRIEYVTVTPE
Intron Amino Acid Position:
1445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
74.7
35.6
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
74.7
0.56
0.8
68.2
32.1
Minor 5ss
31.4
-2.1
3.2
39.6
46.4
Minor BPS
44.3
-0.4
2
57.11
41.6

Associated Gene:

Gene:
SUPT6H
Ensembl Gene ID:
ENSAPLG00000001319
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001927
6688553 - 6709315
20763