About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6706806_6707204_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6706806 - 6707204
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TTGGCTTCTATT
Flanking Amino Acid:
FKDHYQDPVPGITPSSSSRT
Intron Amino Acid Position:
1483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
75.7
0.58
0.9
71.7
38
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
47.4
-0.1
1.9
67.32
44.1

Associated Gene:

Gene:
SUPT6H
Ensembl Gene ID:
ENSAPLG00000001319
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001927
6688553 - 6709315
20763