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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6712730_6712818_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6712730 - 6712818
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CACCCCTGACCC
Flanking Amino Acid:
EECVEPYLYVWCRAYNTVAV
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
68
0.41
0.8
61.3
29.1
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
47.4
-0.2
1.8
53.81
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027043
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047100
6712231 - 6714109
1879