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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6712954_6713040_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6712954 - 6713040
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TGCCGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTGAC
U12 Branch Point Sequence:
CTCTCCGTGACC
Flanking Amino Acid:
HTISHCDCDRRLKECLQQVN
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
48.6
-0
1.2
40.4
40
Major PPT
68.3
0.41
0.9
61.4
35
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
57.2
0.21
2.1
69.28
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027043
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047100
6712231 - 6714109
1879