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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6716884_6717040_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6716884 - 6717040
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTGGAG
U12 Branch Point Sequence:
GGCTGCTGGAGG
Flanking Amino Acid:
YRIQQIAEGEKVRQVLMAQA
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.2
34.5
Major BPS
37
-0.8
1.7
30.7
44
Major PPT
86.5
0.82
0.7
81.3
23.7
Minor 5ss
28.3
-2.5
3.1
31.3
36.6
Minor BPS
40.1
-0.9
2.1
40.54
43.6

Associated Gene:

Gene:
FLOT2
Ensembl Gene ID:
ENSAPLG00000015848
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016551
6714834 - 6717677
2844