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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6717225_6717324_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6717225 - 6717324
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GGGTCCTCACCC
Flanking Amino Acid:
LALVLDALPEIAAKVAAPLS
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
80.3
0.68
0.7
72.7
32
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
50.1
-0
1.9
60.36
44.4

Associated Gene:

Gene:
FLOT2
Ensembl Gene ID:
ENSAPLG00000015848
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016551
6714834 - 6717677
2844