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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6719377_6723269_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6719377 - 6723269
Intron Length:
3893

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCTGCTCTG
5'SS Class:
weak_major
3'SS Sequence:
AGTGGGGATTTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTCAG
U12 Branch Point Sequence:
TCAGTGGGGATT
Flanking Amino Acid:
RPHSLLVPSPGNIRAPNPTE
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.5
0.01
1.4
49.6
46.6
Major BPS
49.4
-0
1.7
60.7
45.9
Major PPT
49.9
-0
1.1
44
46.4
Minor 5ss
27.6
-2.6
4
33.4
41.9
Minor BPS
32.8
-1.2
2.4
46.61
40.3

Associated Gene:

Gene:
ERAL1
Ensembl Gene ID:
ENSAPLG00000014894
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015544
6719075 - 6726957
7883